Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTA--LNDGVLSVIAESTAWATQLR-IMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG
2WP0 Chain:C ((33-75))
-----------------------------------------------------------------------------------------------------------------LKYNPNASKSDIAFFYAPNQVLCTTITAKYGALLKEILSQNK-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2WP0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14366 for 166 contacts (-86.5/contact) +
2D Compatibility (PS) -4467 + (NN) -3812 + (LL) 6264
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -17781.0 ( -107.11 by residue)
QMean score : 0.063
(partial model without unconserved sides chains):
PDB file :
Tito_2WP0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP0-query.scw
PDB file :
Tito_Scwrl_2WP0.pdb
: