Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVL-VDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4BMX Chain:A ((21-251))
MVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVAIQLVQHDVDLSAFDHPLGFIPESAIFIETSESLN-----ALAKEVANE-----------------QHIVLKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDN-------SFDAFLEKSAQTSAKFLKSMVDEL---
General information:
TITO was launched using:
RESULT:
Template:
4BMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -219849 for 1922 contacts (-114.4/contact) +
2D Compatibility (PS) -23878 + (NN) -7256 + (LL) 304
1D Compatibility (HY) -20000 + (ID) 3500
Total energy: -274179.0 ( -142.65 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_4BMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMX-query.scw
PDB file :
Tito_Scwrl_4BMX.pdb
: