Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYR--NHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLP-------RRTAESALRASLSPELGT
3E0M Chain:A ((7-183))
--------LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLP-AIYTVVQ-EQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGY-CHIDVTDADKPLIDAANYEKPSQEVLKASLSEE---
General information:
TITO was launched using:
RESULT:
Template:
3E0M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61504 for 1197 contacts (-51.4/contact) +
2D Compatibility (PS) -18545 + (NN) -16565 + (LL) 1188
1D Compatibility (HY) -14400 + (ID) 3250
Total energy: -113076.0 ( -94.47 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_3E0M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E0M-query.scw
PDB file :
Tito_Scwrl_3E0M.pdb
: