Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDAADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTG-PSARELAQTRTVQQVRDLARDRGR----QMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQAPV-GVMVGHLQVPGLTGSEPASLSKAAVN-LLRTGTGYGAPPFDGPVFSDDLSGM-AAISDRFGVSEAVLRTLQAGADIALWVTTKE-VPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 4GVF Chain:A ((57-292)) | ---------------------------------------------------------------------------------------------------------------------LVVAVDQEGGRVQRFRE--GFTRLPAAQSFFALHGLEEGGRLAQEAGWLMASEMIAMDIDISFAPVLDVGHIS--AAIGERSYHADPAKALAMATRFIDGMHDAGMKTTGKHFPGHGAVTADSHKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRAID-PRPASGSPYWLKTVLRQELG-----FDGVIFSDDLSMEGAAIMGSY--AERAQASLDAGCDMILVCNNRKGAVSVLDNL--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74873 for 1915 contacts (-39.1/contact) +
2D Compatibility (PS) -24839 + (NN) -15471 + (LL) 7968
1D Compatibility (HY) -14000 + (ID) 4450
Total energy: -125665.0 ( -65.62 by residue)
QMean score : 0.374
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