Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKTVLILGAGVGGLTTADTLRQLLPPEDRIILVDRSFDGTLGLSLLWVLRGWRRPDDVR--VRPTAASLPGVEMVTATVAHIDIAAQ-VVHTDNSVIGYDALVIALGAALNTDAVPGLSDALDADVAGQFYTLDGAAELRAKVEAL--EHGRIAV-AIAGVPFKCPAAPFEAAFLIAAQLGDRYATGTVQIDTF-TPDPLPMPVAGPEVGEA---LVSMLKDHGVGFHPRKALARVDEAARTMHFGDGTSE-------PFDLLAVVPPH--VPSAAARSAGLSESGWIPVDPRTLSTSADNVWAIGDAT----VLTLPNGKPLPKAAVFAEAQAAVVAHGVARHLGYDVAERHF-TGTGACYVETGDHQAAKGDGDFFAPSAPSVTLYPPSREFHEEKVAQELAWLTRWKT |
3SZ0 Chain:A ((4-406)) | -SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIR-HYVERKGIHFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPG-SDPHEGPVQ-SICTVDHAERAFAEYQALLREPGPIVIGAMAGA--SCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQTMGTWNAVCFADMGDRGAAFIALPQLKPRKVDVFAY--GRWVHLAKVAFEKYFIRKMK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZ0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204856 for 3327 contacts (-61.6/contact) +
2D Compatibility (PS) -41649 + (NN) -22508 + (LL) -164
1D Compatibility (HY) -17200 + (ID) 5400
Total energy: -291777.0 ( -87.70 by residue)
QMean score : 0.416
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