Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMGSVIKKRRKRMSKKKHRKLLRRTRVQRRKLGK
2JOD Chain:B ((6-38))FTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNK


General information:
TITO was launched using:
RESULT:

Template: 2JOD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		3D Compatibility (PKB) 12682 for 130 contacts (97.6/contact) +
2D Compatibility (PS) -3089 + (NN) 2742 + (LL) 0
1D Compatibility (HY) -800 + (ID) 400
Total energy: 11135.0 ( 85.65 by residue)
QMean score : 0.432

(partial model without unconserved sides chains):
PDB file : Tito_2JOD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2JOD-query.scw
PDB file : Tito_Scwrl_2JOD.pdb: