Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFGSDTRTVN-SDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRADTYFD-FGGVHAAFADPYCPTLRAAVTGLPGVV-----DGGTMVVIQGPRFSTRAESQWFAAAGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADERTCTHCQHHAGVPLPFELP
1SD2 Chain:A ((12-258))
-------IGIIGGTGLDDPEILEGRTEKYVDTPFGKPSDALILGKIKNVDCVLLARHGRQHTIMPSKVNYQANIWALKEEGCTHVIVTTACGSLREEIQPGDIVIIDQFIDRTTMRPQSFYDG-GVCHIPMAEPFCPKTREVLIETAKKLGLRCHSKGTMVTIEGPRFSSRAESFMFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCW-----AVSVDRVLKTLKENANKAKSLLLTTIPQI----------------------
General information:
TITO was launched using:
RESULT:
Template:
1SD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160070 for 1980 contacts (-80.8/contact) +
2D Compatibility (PS) -24924 + (NN) -12805 + (LL) 1664
1D Compatibility (HY) -18000 + (ID) 4600
Total energy: -218735.0 ( -110.47 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1SD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD2-query.scw
PDB file :
Tito_Scwrl_1SD2.pdb
: