Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR------------------------GRADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRALGK
2RGX Chain:A ((1-203))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVF--PKHGN-VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG-
General information:
TITO was launched using:
RESULT:
Template:
2RGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64177 for 1376 contacts (-46.6/contact) +
2D Compatibility (PS) -19719 + (NN) -14725 + (LL) -268
1D Compatibility (HY) -19200 + (ID) 4350
Total energy: -122439.0 ( -88.98 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_2RGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RGX-query.scw
PDB file :
Tito_Scwrl_2RGX.pdb
: