Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNILSRIFARTPSLRTRVVVATAIGAAIPVLIVGTVVWVGITNDRKERLDRRLDEAAGFAIPFVPRGLDEIPRSPNDQDALITVRRGNVIKSNSDITLPKLQDDYADTYVRGVRYRVRTVEIPGPEPTSVAVGATYDATVAETNNLHRRVLLICTFAIGAAAVFAWLLAAFAVRPFKQLAEQTRSIDAGDEAPRVEVHGASEAIEIAEAMRGMLQRIWNEQNRTKEALASARDFAAVSSHELRTPLTAMRTNLEV----LSTLDLPDDQRKEVLNDVIRTQSRIEATLSA---LERLAQGELSTSDDHVPVDITDLLDRAAHDAARIYPDLDVSL-----VPSPTCIIVGLPAGLRLAVDNAIANAVKHGGA----TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSR-GSTASHS--GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGPS |
| 4JAS Chain:A ((13-246)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKRIDRMKTEFIANISHELRTPLTVIKGYAEMIYNSLGELDLS--TLKEFLETIIEQSNHLENLLNELLDFSRLERKSLQINRE--KVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYID-PTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIP--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69807 for 1487 contacts (-46.9/contact) +
2D Compatibility (PS) -23230 + (NN) -9950 + (LL) 17188
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -104449.0 ( -70.24 by residue)
QMean score : 0.501
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