Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-----AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGV-------PYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4F4U Chain:A ((24-272))
--IVIISGAGVSAESGVPTF-----GYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL--------
General information:
TITO was launched using:
RESULT:
Template:
4F4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132185 for 1810 contacts (-73.0/contact) +
2D Compatibility (PS) -24193 + (NN) -13577 + (LL) 1040
1D Compatibility (HY) -18800 + (ID) 4850
Total energy: -192565.0 ( -106.39 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4F4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F4U-query.scw
PDB file :
Tito_Scwrl_4F4U.pdb
: