Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAGGEPDARYEIE
4YIF Chain:A ((32-125))
------------------------------------------VSLSQLSALTTLANEGAMTPGALAIRERVRPPSMTRVIASLADMGFVDRAPHPIDGRQVLVSVSESGAELVKAARRARQEWLAERLATLNRSER------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56861 for 621 contacts (-91.6/contact) +
2D Compatibility (PS) -9729 + (NN) -3260 + (LL) 5368
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -70482.0 ( -113.50 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4YIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YIF-query.scw
PDB file :
Tito_Scwrl_4YIF.pdb
: