Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVKRAVNAHKKRRSILKASRGYRGQRSRLYRKAKEQQLHSLNYAYRDRRARKGEFRKLWIARINAAARLNDITYNRLIQGLKAAGVEVDRKNLADIAISDPAAFTALVDVARAALPEDVNAPSGEAA
5GAD Chain:R ((2-118))
-ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA-----------
General information:
TITO was launched using:
RESULT:
Template:
5GAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21836 for 699 contacts (-31.2/contact) +
2D Compatibility (PS) -13076 + (NN) -8284 + (LL) 544
1D Compatibility (HY) -10400 + (ID) 3500
Total energy: -56552.0 ( -80.90 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_5GAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAD-query.scw
PDB file :
Tito_Scwrl_5GAD.pdb
: