Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGV--DGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2L9P Chain:A ((4-157))
--EKKKNKIIFTRTFSAPINKVFDAYTKRELFEQWFHP-QDA---SVTVYDFNATKGGSAFYAIQAPQMISYTIAEYLQVDAPYYIEYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTSTFPTES-AAQQAIDMGV--ETGMNSTLNQLEKLLNQKL--
General information:
TITO was launched using:
RESULT:
Template:
2L9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56380 for 1014 contacts (-55.6/contact) +
2D Compatibility (PS) -16364 + (NN) -6390 + (LL) 736
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -83248.0 ( -82.10 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2L9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L9P-query.scw
PDB file :
Tito_Scwrl_2L9P.pdb
: