Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSPDPYAALPKLPSFSLTSTSITDGQPLATPQVSGIMGAGGADASPQLRWSGFPSETRSFAVTVYDPDAPTLSG-----FWHWAVANLPANVTELPEGVGDGRELPGGALTLVNDAGMRRYVGAAPPPGHGVHRYYVAVHAVKVEKLDLPEDASPAYLGFNLFQHAIARAVIFGTYEQR
1BD9 Chain:A ((53-125))
-------------------------------------------------ISWDGLDS-GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN------------DISSG--TVLSD-----YVGSGPPKGTGLHRYVWLVY---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38506 for 400 contacts (-96.3/contact) +
2D Compatibility (PS) -7482 + (NN) -4343 + (LL) 5496
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -52935.0 ( -132.34 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_1BD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BD9-query.scw
PDB file :
Tito_Scwrl_1BD9.pdb
: