Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGQIVAGEIGGQRTTPVGGGLPLACCLDGRPPIVPHRRRRRIAALRSVLRMRDTPRPARSRCDQVTSHAVLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGR----NTGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF |
4JAM Chain:H ((56-152)) | --------------------------------------------------------------------------------------------------------------------ETNYSPSLKGRVSISVD----TSEDQFSLRLRSVT--AADTAVYFCASLPRGQL--VNAYFRNWGRGSLVSVTAASTKGPSVFPLAPSSKSTSGG-TAALGCLVKD----------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4867 for 374 contacts (13.0/contact) +
2D Compatibility (PS) -9264 + (NN) 2008 + (LL) 11308
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: 2119.0 ( 5.67 by residue)
QMean score : 0.061
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