Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIARHLPEHAIVQFVKAICSPMALAS
1PVM Chain:A ((14-136))
------IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI---------------
General information:
TITO was launched using:
RESULT:
Template:
1PVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85759 for 896 contacts (-95.7/contact) +
2D Compatibility (PS) -13354 + (NN) -6379 + (LL) 2060
1D Compatibility (HY) -10000 + (ID) 1550
Total energy: -114982.0 ( -128.33 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1PVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVM-query.scw
PDB file :
Tito_Scwrl_1PVM.pdb
: