Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRDLAPALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVGKPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVGQPLQDHLAAVLHRQR
3WJD Chain:A ((26-173))
------PFVAPLSYLLGTWRGQGEGEYPTIPSWRYGEEIRFSHSGKPVIAYTQKTWKLESGAPLLAESGYFRPRPDGSIEVVIACSTGLVEVQKGTYNVDEQSIKL----KSD----LVGNASKVKEISREFELVDGKLSYVVRLSTTTNPLQPLLKAILDK--
General information:
TITO was launched using:
RESULT:
Template:
3WJD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55560 for 1061 contacts (-52.4/contact) +
2D Compatibility (PS) -15828 + (NN) -8901 + (LL) 960
1D Compatibility (HY) -12800 + (ID) 2950
Total energy: -95079.0 ( -89.61 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3WJD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WJD-query.scw
PDB file :
Tito_Scwrl_3WJD.pdb
: