Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHCPFCRHPDSRVIDSRETDEGQAIRRRRSCPECGRRFTTVETAVLAVVKRSGVTEPFSREKVI-SGVRRACQGRQVDDDALNLLAQQVEDSVRAAGSP--EIPSHDVGLAILGPLRELDEVAYLRFASVYRSFSSADDFAREIEALRAHRNLSAHS
1VRA Chain:A ((72-141))
----------------------------------------VQAAPLKVTQESIAVEGKLQAMIVNSGIANACTGKRGLDDAY---------TMRAVGAETFHIPEHYVAVTSTGVIGEF--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VRA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11315 for 449 contacts (-25.2/contact) +
2D Compatibility (PS) -6981 + (NN) -1615 + (LL) 5944
1D Compatibility (HY) -2800 + (ID) 1150
Total energy: -17917.0 ( -39.90 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_1VRA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VRA-query.scw
PDB file :
Tito_Scwrl_1VRA.pdb
: