Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
1YBD Chain:A ((7-237))
-----------------------------YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV--
General information:
TITO was launched using:
RESULT:
Template:
1YBD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197111 for 1931 contacts (-102.1/contact) +
2D Compatibility (PS) -25789 + (NN) -15420 + (LL) 1064
1D Compatibility (HY) -19600 + (ID) 5500
Total energy: -262356.0 ( -135.87 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1YBD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBD-query.scw
PDB file :
Tito_Scwrl_1YBD.pdb
: