Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPKFEVPDGWTVQAFRFTLDPTEDQAKALARHFGARRKAYNWTVATLKADIQAWHASGTVTAKPSLRVLRKRWNTVKDDVCVNTETGVAWWPECSKEAYADGIAGAVEAYWNWQTSRAGKRAGKRVGFPRFKRKGRDQDRVSFTTGAMRVEPDRRHLTLPVIGTVRTHENTRRIERLIKAGRARVLAISVRRNGTRLDASVRVLVQRPQQPKVVHPGSRVGVDVGVRRLATVATADGTAIEQVENPRPLGAALRELRHVCRARSRCTKGSRRYRERTTQISRLHRRVNDVRTHHLHVLTTRLAQTHGRIVVEGLDATEMLRQKGLPGARARRRGLSDAALGTPRRHLSYKTVWYGSALVVADRWFPSSKTCHACRHVQDIGWD-EQWQCDRCSVVHQRDDCAAINLARYEETSSIVGPVGAAVKRGADRKTGPRPAGGCEARKGSSPKAAEQPRDGVQVA |
2K4X Chain:A ((14-49)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKK------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2K4X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8547 for 182 contacts (-47.0/contact) +
2D Compatibility (PS) -3790 + (NN) -1952 + (LL) 27972
1D Compatibility (HY) -2400 + (ID) 250
Total energy: 11033.0 ( 60.62 by residue)
QMean score : 0.235
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