Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTPNAASTGDSAKNTITGCCLITARALVARTRSISLPGMPFRMPADYHNASSDEPTNRHPWPAPARCCRHEWRTMRRTNACDRRRFGLSLTIHEDACRIISVVPVVLEVRRAEPAHPATPYPEPLARCSRSPGLNESSHMSGRIPP |
2LSM Chain:A ((104-127)) | -------------------------------VAFVLPGTAFRVSAGVAAEMTERG------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 328 for 91 contacts (3.6/contact) +
2D Compatibility (PS) -2550 + (NN) 156 + (LL) 6796
1D Compatibility (HY) -1600 + (ID) 300
Total energy: 2830.0 ( 31.10 by residue)
QMean score : 0.064
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