Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
3HVU Chain:A ((21-202))
---------------------------QSNAMMNQDIEKVLISEEQIQEKVLELGAIIAEDYKNTVP------LAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTGRKVDLKADYVGFTVPHEFVVGYGLDYKEQYRNLPYVGVLKPSVY-
General information:
TITO was launched using:
RESULT:
Template:
3HVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157554 for 1409 contacts (-111.8/contact) +
2D Compatibility (PS) -19719 + (NN) -8410 + (LL) 2020
1D Compatibility (HY) -22000 + (ID) 4550
Total energy: -210213.0 ( -149.19 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3HVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVU-query.scw
PDB file :
Tito_Scwrl_3HVU.pdb
: