Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQERE--QTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
1YVI Chain:A ((27-138))
-----FQQLQMLQD-TPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA---
General information:
TITO was launched using:
RESULT:
Template:
1YVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48537 for 752 contacts (-64.5/contact) +
2D Compatibility (PS) -11747 + (NN) -9728 + (LL) 460
1D Compatibility (HY) -6400 + (ID) 700
Total energy: -76652.0 ( -101.93 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1YVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVI-query.scw
PDB file :
Tito_Scwrl_1YVI.pdb
: