Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGL-PAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARL-ADGVVVGSALIDRIA-KARDNAQAVKDVLALCGELAEGVRNAR
2DZU Chain:A ((6-239))
-----------------SLIPYLTAGDPDKQSTLNFLLALDEYAGA--IELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRR-HSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVNGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGT----EEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVEELLGI--------
General information:
TITO was launched using:
RESULT:
Template:
2DZU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170179 for 1944 contacts (-87.5/contact) +
2D Compatibility (PS) -25966 + (NN) -19729 + (LL) 2240
1D Compatibility (HY) -19600 + (ID) 4900
Total energy: -238134.0 ( -122.50 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2DZU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DZU-query.scw
PDB file :
Tito_Scwrl_2DZU.pdb
: