Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQINCYQQVVYDGFEAGRRYRLEVRP------QLRRALA--------LLSDERGEVVARSNFQTSRCPPY |
1SMP Chain:I ((20-78)) | -----------------------------------------------------------------------------------------AEQHCDIRLNTDVLDG-TTWKLAGDTACLQKLLPEAPVGWRPTPDGLTLTQADGSAVAFFSRNRDRYEHK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SMP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11445 for 237 contacts (-48.3/contact) +
2D Compatibility (PS) -4233 + (NN) 2772 + (LL) 3780
1D Compatibility (HY) 400 + (ID) 350
Total energy: -9076.0 ( -38.30 by residue)
QMean score : 0.021
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