Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPAITRKRFIAGAVCPACSEQDKIQMWEEDGVPHRECVACGYADTLNAQGQSIPKELGTRVNQNAPKPANPKVQSVQFFPNPKLKKKPDA
1VQ8 Chain:Z ((26-60))
-----------EDHACPNCGED----RVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRS----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8255 for 187 contacts (-44.1/contact) +
2D Compatibility (PS) -3528 + (NN) -879 + (LL) 2324
1D Compatibility (HY) -400 + (ID) 450
Total energy: -11188.0 ( -59.83 by residue)
QMean score : 0.073
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: