Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPA-EPQAAVADRKFLEIDVDNFDARLKAMKPRVAFNVPNVLTGE-GNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALASAPKPKDDEPQA
3J9O Chain:A ((2-135))
------AKNKIPN---SRLMINYETNVDGVLKKKELPYRVLVVGDLSKGRSVDAKKEFADREVRRV-NNGVDRVLEEMNISFDFEAPNFVSKDPSNLKVNYRIESVKDFRPDAVAKKVPEIRALLEMKEILASFAKDIENNRNL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3J9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9970 for 599 contacts (-16.6/contact) +
2D Compatibility (PS) -13191 + (NN) -1281 + (LL) 2380
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -33962.0 ( -56.70 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_3J9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J9O-query.scw
PDB file :
Tito_Scwrl_3J9O.pdb
: