Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGATRKPGFTVAVLATLLAAVVVLLGAYTRLTHAGLGCPDWPGCYGFVHVPLSEAQLAHAELHFPDAPVEAQKGWNEMIHRYFAGALGLLILGLALHALVRRGRDGQPLKLPLLLLAVVIAQAAFGMWTVTLKLWPQVVTAHLLGGFTTLALLFLLALRLSGRFAARRYPAATRGLAGLALLLVIGQIA------LGGWVSSNYAAVACIDLPTCHGE--WWPRMDFANGFHLTQHIGPNYLGGQLDSDARTAIHMTHRIGALCVTLVLLLLAWRLQRSGLVWPTALMLLGLSLQIGLGISNVLLHLPLPVAVAHNGGGALLLLSLVLVNYRLRAPASVRAPAPSPQRVRRTLPPAQGSRLKAA |
4OZK Chain:A ((1-49)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACQCPDAISGWTHTDY---------QCHGLENKMYRHVYAICMNGTQVYCRTEWGSSC---------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OZK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4084 for 205 contacts (-19.9/contact) +
2D Compatibility (PS) -4177 + (NN) 2268 + (LL) 25888
1D Compatibility (HY) -2000 + (ID) 600
Total energy: 17295.0 ( 84.37 by residue)
QMean score : -0.294
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