Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSG-EAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEAL-HGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAK---AGQPVSFEVPQE-GSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH |
| 2V84 Chain:A ((25-319)) | --------------------DVLYLYNWTYYTPTSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQFIKESVRARIA-YDPKMEYSVPYYLGAAGIAVN-KKAVPSYA----RTWSIF-----SRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGF-AEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAA----AYQKKTPYYSEHDLERGTLKTDVGAAIEHYNAHWNAVRFR---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2V84.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -139086 for 2400 contacts (-58.0/contact) +
2D Compatibility (PS) -31437 + (NN) -16950 + (LL) 3336
1D Compatibility (HY) -24800 + (ID) 3900
Total energy: -212837.0 ( -88.68 by residue)
QMean score : 0.550
|
|
|