Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLKITDDCINCDV--CEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIPLD-DANVESKDQLMEKYRKITGKA
1PC4 Chain:A ((2-85))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDEVPEDMQEFIQLNAELAEVWPNITEKK
General information:
TITO was launched using:
RESULT:
Template:
1PC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30911 for 585 contacts (-52.8/contact) +
2D Compatibility (PS) -8967 + (NN) -10946 + (LL) 208
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -57416.0 ( -98.15 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_1PC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PC4-query.scw
PDB file :
Tito_Scwrl_1PC4.pdb
: