Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISL-NVSTSSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGGDGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARSNMLALKTLGCPDIRVIAPRTL-LPIGLEEQY---GVRVF--TNADEGLKDVDVVIMLRLQRERMQGGLLPSEGEFFKLYGLTEKRLKL---AKPDAIVMHPGPINRGVEIESAVADGAQSVILNQVTYGIAIRMAVLSMAMSGQNTQRQLEQEDAE |
1ML4 Chain:A ((6-305)) | -----------------RDVISIRDFSKEDIETVLATAER-LERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYC-DVIVIRHPKEGAARLAAE--VAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKER-----FPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGVI------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ML4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205395 for 2496 contacts (-82.3/contact) +
2D Compatibility (PS) -32246 + (NN) -15581 + (LL) 2368
1D Compatibility (HY) -24800 + (ID) 5400
Total energy: -281054.0 ( -112.60 by residue)
QMean score : 0.563
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