Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQFFLRYAYAPLFWSGFIGLATWQVGYRQASHAWLVALFLGALGLSFLAERRLPYQPRWNRPHADRLRDVLHASVNESLNALGILALPLLAGVLGFWPVWPQAWPLWLQLLLAIVLADLGITLVHYASHRSALLWRLHAVHHSVQRLYGFNGLMKHPLHLGLEALGGTLPLLLLGVPQTVAALLAFAIGIQLLLQHSNVDMRIGGLRHVFAWAPLHRLHHIRYGRAGDVNFALFFSVWDRLLGTALHRPDYRLDSTDMGIGDQPDYPRDYAGQLLAPFRDLPRSRHVPQPPEGLGRSAGQA |
| 3NK4 Chain:C ((20-30)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSADHHHHHH--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -252 for 27 contacts (-9.3/contact) +
2D Compatibility (PS) -1010 + (NN) 1237 + (LL) 20700
1D Compatibility (HY) 800 + (ID) 200
Total energy: 21275.0 ( 787.96 by residue)
QMean score : -0.613
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