Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLSTWNLTIPQGRPA--------ITISTSQLQRDYRSD-YFQRTADGIRFWVPVNGSHTRNSEFPRSELRETLSSGRPYNWRYARADNWLEATLRIEAVPSTRR-----MIIGQIHSDGSNSG--QAAPLVKLLYQLRLDQG------RVQALVRERPDDGGTRAYTLMDGIPLGQPFSYRIGVSRSGLLSVSVNGSALEQQLDPQWAYQGLYFKAGLYLQDNRGPSSEG--GRATFSELRVSHQ
3ZPY Chain:A ((13-248))
----NTWKINSFIGSPGSSATYYDDITDASGISYNTYSDDNYFYTDGEWVYFKCYRGLGGSANSQNPRVELRE-MDNGNLASWTGDSGTHTMEWTVQVNQLPQDTDGDGGVLCFGQIHGPSKNSDGVEVDDVVRVQFIGEENQSSGSVKLKISGYVTEEQ--GGSQTFS---GYSLDTTYNCKL-VYSGGYVELFMNGSSVFRKKMEVDDLSENYFKVGNYLQSVKGASYTGSYGLVRIKNLSVTHN
General information:
TITO was launched using:
RESULT:
Template:
3ZPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58343 for 1647 contacts (-35.4/contact) +
2D Compatibility (PS) -22685 + (NN) -11274 + (LL) 204
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -107348.0 ( -65.18 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_3ZPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZPY-query.scw
PDB file :
Tito_Scwrl_3ZPY.pdb
: