Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQSTRKLLAGLALAVSAGLVQAAPEV-RIYNWFDYIAPDTLKNFQAQTGIAPKYDVYDSNEVLEAKLLSGHSGYDLVVPSDSFLPNYLKAEVFQPLDKSKLPNWKNLNPALLKVLAGKDPGNRYVMPYMWGTNGIAYNLDKVRAVLGDDAPLDSWDLVFKPENLAKLQQCGVAFLDSPTEVIPEVLHYLGLSPNSHQPEDYRRAEEHLA-KLRPYITYFSSSKFVSDLANGNVCVAIAWSGGAMQAANRAREAKNGIRIEYRIPKEGAA-AWFDVLAIPRDAKNVEQAHAFLDYLLRPEVVAPISDYVAYANPNKAADGLISAELRDNPNVYPPEEVQARLYSVEMLPPKLERLRTRTWSKIKTGK |
2V84 Chain:A ((25-294)) | ------------------------DVLYLYNWTYYTPTSLIKKFEQQYNVQVVYDDYASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNVQFIKESVRARIA-YDPKMEYSVPYYLGAAGIAVNKKAVPSY------ARTWS-IFSRKDLA----YRMSMMDDMREVMGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHE----HIDFFIPQDVASPVYVDSFCIPKGARNRDLAHAFINFFLEPAHYAEFLDTFGFPSTIHREAAAYQKKTPYYSEHDLERGTLKTDVGAAIEHYNAHWNAVRFR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V84.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162804 for 2099 contacts (-77.6/contact) +
2D Compatibility (PS) -28312 + (NN) -10382 + (LL) 2804
1D Compatibility (HY) -22400 + (ID) 4100
Total energy: -225194.0 ( -107.29 by residue)
QMean score : 0.511
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