Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPFATIPATERNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKA
2GOY Chain:F ((27-249))
--------------------------PFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE------------------
General information:
TITO was launched using:
RESULT:
Template:
2GOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84710 for 1749 contacts (-48.4/contact) +
2D Compatibility (PS) -23740 + (NN) -10470 + (LL) 2484
1D Compatibility (HY) -31200 + (ID) 11150
Total energy: -158786.0 ( -90.79 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_2GOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOY-query.scw
PDB file :
Tito_Scwrl_2GOY.pdb
: