Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MSVIIALAALGLLMLAAYRGYSVILFAPLAALGAVLLTDPSAVAPTFTGVFMEKMVGFIK-LYFPVFLLGAVFGKL-IELAGFSRSIVAAAIRLLGTRQAMLVIVLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIPATIALGAFSFTMDALPGTPQIQNIIPSTFFGTHAWAAPWLGTLGALFVFAVGMLYLRRQANKARRNGEGYGSDLRNEPETADDLRLPNPWLALSPLVLVGVANLLFTHWIPQWYGQVHTLQLAGMATPLQTEVGKLTAIWAVQAALLLGILLVLASGFAAIRSRLAEGTRSAVAGSLLAAMNTASEYGFGAVIASLPGFLVLADALKSIPNPLVNEAITVTLLAGITGSASGGMSIALAAMSDTFIAAANAAQIPLEVLHRVAAMASGGMDTLPHNGAVITLLAVTGLTHREAYKVIFGITLIKTLA--VFFVIGLFYATGLV---- |
| 4OYF Chain:A ((9-416)) | EYPVLQKILIGLILGAIVGLILGHY-GY-------------------AHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGI----------------HLAVGGQLVHILLD-------------------IVPTNPFGALA-NGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAING-LAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVG-----ELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSS-SGTLPVTMRVAKEMGISEGIYS---FTLPLGATINMDGTALYQGVCTFFIANALGS-----HLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVG--------LPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OYF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -343909 for 3355 contacts (-102.5/contact) +
2D Compatibility (PS) -40274 + (NN) -12030 + (LL) 5912
1D Compatibility (HY) -25600 + (ID) 4000
Total energy: -419901.0 ( -125.16 by residue)
QMean score : 0.281
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