Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRD---PQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKS---LPAEIHQVIERQYQGVLRHHDRVRALRDARA
2C41 Chain:A ((6-152))
---TLKEQVLTTLKREQANAVVMYLNYKKYHWLTYGPLFRDLHLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYLKV-ATVTP---SSGQLTVKQMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRLVQTHQKHRWFLKEFLAKGD
General information:
TITO was launched using:
RESULT:
Template:
2C41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8535 for 1093 contacts (-7.8/contact) +
2D Compatibility (PS) -15832 + (NN) -11370 + (LL) 504
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -37383.0 ( -34.20 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_2C41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C41-query.scw
PDB file :
Tito_Scwrl_2C41.pdb
: