Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAIPLEHGLALASVLFALGLVGLMVRRNILFVLMSLEVMMNAAALAFVVAGSRWGQPDGQVMFILVLSLAA--AEASIGLAILLQLYRRFHTLDIDAASEMRG
4CAF Chain:A ((328-384))
-----------------------LLAKRNNFDVFNALEVMQNKS----VFEDLKFGEGDGSLKYYLYNWKCASFAPAHVGIVLL--------------------
General information:
TITO was launched using:
RESULT:
Template:
4CAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16267 for 227 contacts (-71.7/contact) +
2D Compatibility (PS) -5302 + (NN) 6199 + (LL) 4260
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -16860.0 ( -74.27 by residue)
QMean score : -0.174
(partial model without unconserved sides chains):
PDB file :
Tito_4CAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CAF-query.scw
PDB file :
Tito_Scwrl_4CAF.pdb
: