Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MNPLIKTILSTNAGAGLAILRIVTGLTLMSHG---SQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFTMIVAIF---SVHIG------------------NGFFITDNGYEYALTLLMISVA---------LLIDGAGKFSLDGKLSR--
1QJZ Chain:A ((10-188))
KQASIPAPGSILSQPNTEQSPAIVLPFQFEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSN---PLTVYLAWVPANSPATPTQILRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTNPSKIPTASIQISGRIRLSKPMLIAN
General information:
TITO was launched using:
RESULT:
Template:
1QJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125444 for 1003 contacts (-125.1/contact) +
2D Compatibility (PS) -14079 + (NN) 6882 + (LL) -168
1D Compatibility (HY) -400 + (ID) 1200
Total energy: -134409.0 ( -134.01 by residue)
QMean score : 0.057
(partial model without unconserved sides chains):
PDB file :
Tito_1QJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QJZ-query.scw
PDB file :
Tito_Scwrl_1QJZ.pdb
: