Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGI-EVQLTREPGGTPLAERIRELLL---APSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLNG
5TMP Chain:A ((2-211))
-RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQ-DKSIHTIDATQPLEAVMDAIRTTVTHWVKEL--
General information:
TITO was launched using:
RESULT:
Template:
5TMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83502 for 1639 contacts (-50.9/contact) +
2D Compatibility (PS) -23726 + (NN) -17299 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 4700
Total energy: -147127.0 ( -89.77 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_5TMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5TMP-query.scw
PDB file :
Tito_Scwrl_5TMP.pdb
: