Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQGSLMLDIGGTWLTAEDRQILRHPEVGGLIIFARNIEHPAQVRELCAAIR--AIRPDLLLAVDQEGGRVQRLRQGFVRLPAMRAIADNPNAEELAEHCGWLMATEVQAVGLDLSFAPVLDLDHQRSAVVGSRAFEGDPERAALLAGAFIRGMHAAGMAATGKHFPGHGWAEADSHVAIPEDARSLEEIRRSDLVPF-ARL-AGQLDALMPAHVIYPQVDPQPAGFSRRWLQEILRGELKFDGVIFSDDLSMAGAHVVGDAASRIEAALAAGCDMGLVCNDRASAELALAALQRLKVTPPSRLQRMRGKGYANTDYRQQPRWLEALSALRAAQLID |
3GSM Chain:A ((2-322)) | --GPLWLDVAGYELSAEDRAILAHPTVGGVILFGRNYHDNQQLLALNKAIRQAAARP-ILIGVDQEGGRVQRFREGFSRIPPAQYYARAENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAI-GNRAFGEDVQTVLKHSSAFLRGMKAVGMATTGKHFPGHGAVIAD-HLETPYDER---ETIAQDMAIFRAQIEAGVLDAMMPAHVVYPHYDAQPASGSSYWLKQVLREELGFKGIVFSDDLSM----VMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEV--PQAEALLKKQQFSYSELKRLERWQQASANMQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174361 for 2785 contacts (-62.6/contact) +
2D Compatibility (PS) -33543 + (NN) -13306 + (LL) 1452
1D Compatibility (HY) -25200 + (ID) 7750
Total energy: -252708.0 ( -90.74 by residue)
QMean score : 0.440
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