Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQNSLLDGRRVLLTGGARGLGYAFAEAAARAGARVVIADILEERVQRSARELAEQ-GLDISGLPLDLADPVSIERCVAAAVERLGGLDGLVNNASITNSGGKSCEELEIEVFDRVLQVNVRGTWLMTRACLPALRESGRGAVVNLASDT-PLWGAPNLLAYSASKGALIAMTRSLARELGGDGITVNAIAPGLVEVEATEYVPAARHRL-YREQR-ALQRGQQPADVCGAVLFALSDLSRFITGQTLPVNGGFVMP
1VL8 Chain:A ((17-264))
----FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRR--HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW---
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151154 for 2143 contacts (-70.5/contact) +
2D Compatibility (PS) -26858 + (NN) -12870 + (LL) 136
1D Compatibility (HY) -16400 + (ID) 4450
Total energy: -211596.0 ( -98.74 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: