Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSNRYPLPAQTGLVVAPGLPPKNSTLRP-----DQLNK----------RLSSAWHHLYDL-----CPELLKIDPPDGLTILRGFLQWAAEQKAAWNWAMHLRLYCWLLQSPFGAKVTDEHLEVLMDASAARWTVDDTSANRGILLASQGGAHITQDWKAPQAGAGTRVPLERLDLPAPNWTFAYCAVPDPRLREFPGWKPLPARGSLVG |
3II2 Chain:A ((62-112)) | --------------------VLKNQDYARFEIAWVHVDKDGKIEERTVYSIETYWHIFIDIENDLNCPYVL------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3II2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1809 for 116 contacts (-15.6/contact) +
2D Compatibility (PS) -3094 + (NN) -127 + (LL) 9324
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -156.0 ( -1.34 by residue)
QMean score : 0.201
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