Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEPLILDAPNADACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDLALDERH---KRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVSLEEIHDIGAWLRKRL
4H0C Chain:A ((21-210))
-----------AKKAVVMLHGRGGTAADIISLQKVLK--LDEMAIYAPQATNN-----------SWYPYSFMAPVQQ-NQPALDSALALVGEVVAEIEAQGIPAEQIYFAGFSQGACLTLEYTTRN-ARKYGGIIAF-TGGLIGQELAIGNYKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTISGDEIQLVNNTILK--
General information:
TITO was launched using:
RESULT:
Template:
4H0C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131972 for 1591 contacts (-82.9/contact) +
2D Compatibility (PS) -19640 + (NN) -8977 + (LL) 2064
1D Compatibility (HY) -9200 + (ID) 2700
Total energy: -170425.0 ( -107.12 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_4H0C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H0C-query.scw
PDB file :
Tito_Scwrl_4H0C.pdb
: