Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAADRVMQSYGRCCASTGFFDDFYRHFLASSPQIRAKFATT-D--MTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHS-RAALDIRPELYDLWLDALLMAVAEHD-RDCDAETRDAWRDVMGRGIAVIKSYY
1GCV Chain:B ((6-135))
-EERDEISKTFQGTD-MKTVVTQALDRMFKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDV-KTLFKDLSKKHADD--LHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQY
General information:
TITO was launched using:
RESULT:
Template:
1GCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63831 for 856 contacts (-74.6/contact) +
2D Compatibility (PS) -13400 + (NN) -8375 + (LL) 612
1D Compatibility (HY) -6800 + (ID) 800
Total energy: -92594.0 ( -108.17 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1GCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCV-query.scw
PDB file :
Tito_Scwrl_1GCV.pdb
: