Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDDREGQLD
2LYQ Chain:A ((4-61))
--NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF--------
General information:
TITO was launched using:
RESULT:
Template:
2LYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29771 for 406 contacts (-73.3/contact) +
2D Compatibility (PS) -6176 + (NN) -1330 + (LL) 408
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -45069.0 ( -111.01 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2LYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYQ-query.scw
PDB file :
Tito_Scwrl_2LYQ.pdb
: