Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQGRVRDL-RWGPRTLDLDILLFGEQLLDLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
1DY3 Chain:A ((4-157))
-----YIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNK----
General information:
TITO was launched using:
RESULT:
Template:
1DY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103246 for 1149 contacts (-89.9/contact) +
2D Compatibility (PS) -16204 + (NN) -8316 + (LL) 832
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -147684.0 ( -128.53 by residue)
QMean score : 0.655
(partial model without unconserved sides chains):
PDB file :
Tito_1DY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DY3-query.scw
PDB file :
Tito_Scwrl_1DY3.pdb
: