Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQEVRFSRLEPEQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFFEASFSAELLDPQLLDAWLAFWGAVGSIEAIGRVHDHSYGEYRALLV---GVLRQLA----EEGGWA-DFDAELAAISLSALLDGLWLESGLNPATFTPRQGVQICEAWVDGLEAGAHRRFRRAMEAC
2GFN Chain:A ((5-177))
---------VDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFY-------AEG----TARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLALQAILDP----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92425 for 1114 contacts (-83.0/contact) +
2D Compatibility (PS) -18408 + (NN) -18552 + (LL) 4216
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -133819.0 ( -120.12 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2GFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFN-query.scw
PDB file :
Tito_Scwrl_2GFN.pdb
: