Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGK----PVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIV-GLDAK-----DGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAAL-ANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
5AHF Chain:A ((1-244))
-MIIPALNLIDGTVVRL-------QRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGV-----NVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDIS--------NVSLYEEVCARYPQIAFQSSGGIGDIDDIAAL---RGTGVRGVIVGRALLEGKFTVKEAIQCWQN---
General information:
TITO was launched using:
RESULT:
Template:
5AHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180044 for 1754 contacts (-102.6/contact) +
2D Compatibility (PS) -23524 + (NN) -9595 + (LL) 1784
1D Compatibility (HY) -20800 + (ID) 4100
Total energy: -236279.0 ( -134.71 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_5AHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHF-query.scw
PDB file :
Tito_Scwrl_5AHF.pdb
: