Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLGLSRSLWGYRGFVLGSVKREFQSRYRGSLFGALWTVLNPLSMIVVYTVIFSQVMRARLPGVDDGLAYSVYLCA-GLLTWGLFAEITSRSQSMFIENANLLKKISFPRICLPVIVLLNAGVNFAIILALFLGFLALSGRLPGAALLALVPLLAIQVLFAAGLGMILGVLNVFFR---DVGQLFGICLQFWF-WLTPIVYPIGILPEGIRSLIELNPMTALMRSYQQLFLHGQWPDWPSLLPITLLALLLCALGLRLFRQRVGEMVDEL
3ZXU Chain:B ((69-269))
-------SVQLDDKLLLKLLRRNDNAVSDSS--NPLPRVLPSLN-----IEQRKKYLDITLNDVTVTCEKDMILLRKGSFTASFRIAVENESIRSMAIDLN----------------------AFEVELQPIIQYAEDTQN-VNVAMMAVVQFLRIKELHEQMISKIVEA-SKFIRASNNTITLNDLEVSFHCYWNLPSPYP--------ETLILTNK------------------------VQKILDFLIYQYGIQLGVIKYGSTI---
General information:
TITO was launched using:
RESULT:
Template:
3ZXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145457 for 1171 contacts (-124.2/contact) +
2D Compatibility (PS) -20641 + (NN) -8253 + (LL) 6812
1D Compatibility (HY) -10800 + (ID) 2000
Total energy: -180339.0 ( -154.00 by residue)
QMean score : 0.043
(partial model without unconserved sides chains):
PDB file :
Tito_3ZXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZXU-query.scw
PDB file :
Tito_Scwrl_3ZXU.pdb
: